WebJul 7, 2016 · Haplotypes Reference-based phasing using the Haplotype Reference Consortium panel CC BY-NC-ND 4.0 Authors: Po-Ru Loh Petr Danecek Wellcome Sanger Institute Pier Francesco Palamara Christian...
Genotype imputation for Han Chinese population using Haplotype ...
WebReference-based phasing using the Haplotype Reference Consortium panel Po-Ru Loh1,2, Petr Danecek3, Pier Francesco Palamara1,2, Christian Fuchsberger4,5, Yakir A Reshef6, Hilary K Finucane1,7, Sebastian Schoenherr8, Lukas Forer8, Shane McCarthy3, Goncalo R Abecasis5, Richard Durbin3, and Alkes L Price1,2,9 1 Department of … WebThe imputation of the genotyped data was conducted using the Haplotype Reference Consortium (HRC) panel [20,24]. For the purposes of the present study, we used anthropometric, biochemical and genetic data from an initial pool of 766 participants with available data. We investigated associations between 11 VEGF-A-associated SNPs and … farmers weather radar
A reference panel of 64,976 haplotypes ... - Nature Genetics
WebApr 5, 2024 · Beagle was one of the tools used to estimate haplotypes for the 1000GP phase 1 array-based genotype data [ 29 ]. Eagle2 (version v2.3.1). This is a recent reference-based computational phasing algorithm that efficiently leverages information from large external reference panels. WebApr 11, 2024 · Icelandic reference panel by deCODE Genetics ... and deCODE, which excluded variants not found in the Haplotype Reference Consortium version r1.1 panel, quality control used unified criteria. For all cohorts, we included bi-allelic variants with non-ambiguous strands (i.e. no C/G or A/T allele pairs), imputation quality score ≥0.3, and … WebJul 15, 2011 · The reference panel included haplotype information from dozens or hundreds of individuals. As the haplotypes observed in the reference panel is a subset of all the existing haplotypes of a natural population due to limited samples in the reference panel, we classify all the existing haplotypes into two groups, named “observed” and ... farmers weather almanac 2022